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Collaborating with ImmuneSpec
A renewed approach to unlock immunogenic regions of immunopeptides for the development of safe, effective vaccines and therapeutics.
Project initiation meeting
Starting off on the right foot.
At ImmuneSpec, we begin by understanding your project goals in a meeting between you and our project team. This meeting covers project type, target peptides (known/unknown), HLA-type of interest and required input material. This ensures delivery of optimal results and addressing the research question effectively.
During the initiation meeting, we usually discuss:
Project information
Sample details
- Deadlines
- Objectives
- Specific requirements
- Sample intake details
- Sample amounts
- Other additional data/ materials
Sample intake & preparation
Prepping well, is half the work.
After the project kickoff, the second step involves delivering your samples to us or through one of our affiliated partners. As the nature of the samples varies depending on the specific project, we always make sure to discuss storage, handling and (bio)safety requirements.
Project information
- How will the samples be prepared
- Requirements for immunogenicity testing, neoantigen discovery or vaccine development
Affinity purification and MS analysis
Analyzing the samples.
After purification, immune peptides are measured by using a TimsTOF SCP Instrument coupled to an Evosep One chromatography system. Following the measurements, advanced algorithms are deployed to match the obtained MS spectra with the corresponding protein sequence in the database.
Lab hardware
Lab software
- Evosep One
- TimsTOF SCP
- Peaks 11
- Spider search
- Western blot analysis
- Size distribution of identified peptides
- Amount of immunepeptides that match with reference proteins
- MHC Motif clustering
Project information
Report generation
Answers to your questions.
Upon delivery of the report, a dedicated meeting is scheduled to present the results and guide you through the report, elucidate the significance of the obtained findings, provide expert interpretation, and offer valuable recommendations for the next steps in advancing your project.
Results & files overview
Experimental set-up overview
- List of peptides identified
- List of identified peptides matching target proteins
- Access to complete database
- Sample overview per experiment
- Western blot analysis
- Peptide size distribution
- MHC Motif clustering
Project information
Discussion & next steps
Interpretation & presentation.
Upon delivery of the report, a dedicated meeting is scheduled to present the results and guide you through the report, elucidate the significance of the obtained findings, provide expert interpretation, and offer valuable recommendations for the next steps in advancing your project.
Upon request, the written report can be tailored based on the outcomes of this meeting.